PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011488
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 229aa    MW: 25572.3 Da    PI: 4.5054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011488genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-1766116155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                + y+GVr++  + +Wv+e+r+p   +k++r++lg++ ta++Aa+a++ a+++l+g
  Cla011488  66 PVYRGVRRRN-NDKWVCELREP---NKKTRIWLGTYPTADMAARAHDVAALALRG 116
                68*****887.8*********8...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-1366116IPR001471AP2/ERF domain
PROSITE profilePS5103221.69467124IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2167126IPR016177DNA-binding domain
SMARTSM003808.5E-2767130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3067126IPR001471AP2/ERF domain
CDDcd000187.28E-2968126No hitNo description
PRINTSPR003672.3E-76879IPR001471AP2/ERF domain
PRINTSPR003672.3E-790106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDWFAQFSDP LPYYANCSYK SESSSTFSDA GTPPHTVANS DEEVILASNR PKRRAGRRVF  60
KETRHPVYRG VRRRNNDKWV CELREPNKKT RIWLGTYPTA DMAARAHDVA ALALRGKSAC  120
LNFADSAWRF PIPATDDPSV IREAAARAAN ECKDEECNVG REDDDGVSGQ ATADPDRPDY  180
IDDEALSNMP MLLASMAEGL LLSPPSFCVN DDVEWDDVAM NDDVSLWSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437209.11e-152PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9SYS62e-65DRE1C_ARATH; Dehydration-responsive element-binding protein 1C
TrEMBLA0A0A0KQZ21e-137A0A0A0KQZ2_CUCSA; Dehydration-responsive element-binding protein 1F
STRINGPOPTR_0012s13870.14e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.16e-54C-repeat/DRE binding factor 2